This webpage provides supplementary materials for Clustering and browser for "To Be Decided", Peshkin et al., To Be Decided, 2019.

Table of gene sets features

GeneSet/Clusters Median Dynamicity In Set Total In Genome Total Detected Total unDetected Unique in Genome Unique Detected
DNA REPLICATION 0.11997 23 30 31 13 23 10
GO PHOSPHATASE 0.10363 180 320 80 153 159 27
HALLMARK MITOTIC SPINDLE 0.10248 200 405 389 114 193 86
RNA POLYMERASE 0.10225 21 34 8 19 20 2
CELL CYCLE 0.097201 101 178 90 74 90 27
KINOME 0.096979 694 1172 327 590 426 104
RNA DEGRADATION 0.096758 33 61 20 21 33 12
KEGG ENDOCYTOSIS 0.095937 183 332 106 148 158 35
MITO CARTA MOUSE V2 0.09525 974 1395 159 897 823 77
LIGANDS 0.092555 722 1353 62 700 541 22
OXIDATIVE PHOSPHORYLATION 0.089494 152 207 13 144 104 8
ALL PROTEINS 0.087751 2308 5053 6783 0 2279 2308
E3S 0.082997 624 1160 198 548 489 76
SPLICEOSOME 0.081065 108 188 93 65 103 43
CHROMATIN 0.077586 146 234 174 104 116 42
RIBOSOME 0.077168 76 172 36 55 75 21
TRANSCRIPTION FACTORS 0.075053 1412 2269 272 1302 1080 110
RECEPTORS 0.073023 898 1862 37 879 722 19
LYSOSOME 0.071695 78 126 1 77 68 1
GLYCOLYSIS 0.070254 55 87 20 41 39 14
HALLMARK XENOBIOTIC METABOLISM 0.065623 200 403 17 189 174 11
PENTOSE PHOSPHATE PATHWAY 0.063224 12 20 6 9 12 3
KEGG PEROXISOME 0.054253 78 128 9 72 76 6
TRICARBOXYLIC ACID CYCLE 0.051727 26 48 7 21 26 5
PROTEOSOME 0.040117 35 70 11 28 35 7
SECRETED FACTORS 0.029483 321 517 1 320 222 1
FATTY ACID METABOLISM 0.017135 28 49 2 27 28 1
EXTRA CELLULAR MATRIX 0.01346 363 766 3 361 316 2
COLLAGENS 0 60 123 0 0 52 0

Zip files for Clustering Data

Zip files of MATLAB source code for clustering data