Reference SPRING plots

Xenopus tropicalis, genome annotation v10.0

If you use this data/browser in your research, please acknowledge:

- "data generated by XenCAT OD031956" or better "data generated by XenCAT resource funded by NIH OD031956"

- Petrova K, Tretiakov M, Kotov A, Monsoro-Burq AH, Peshkin L. A new atlas to study embryonic cell types in Xenopus. Dev Biol. 2024 Apr 11:S0012-1606(24)00098-8. doi: 10.1016/j.ydbio.2024.04.003. Epub ahead of print. PMID: 38614285.

Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA
*Correspondence to: pesha@hms.harvard.edu

*Gene names format: Xenbase gene ID (v10.0) | gene name (v10.0) | human ortholog gene name

Stage 8

Stage 10

Stage 11

Stage 12

Stage 13

Stage 14

Stage 16

Stage 18

Stage 20

Stage 22

AnnData file links:

S8 S10 S11 S12 S13 S14 S16

Joint plots:

Stage 8-12

Stage 12-18

Stage 18-22

Germ line

Xenopus laevis, genome annotation v9.1

Data and processing made by Cell landscape of larval and adult Xenopus laevis at single-cell resolution, Yuan Liao et al.

*Gene names format: v9.1 gene name | human ortholog gene name | v9.1 gene id

Stage 48

Stage 54

Stage 59

Stage 66