Reference SPRING plots
Xenopus tropicalis, genome annotation v10.0, with human orthologs obtained by mapping the reference proteins to human UNIPROT reference (fasta) (defs), human ortholog gene names
If you use this data/browser in your research, please acknowledge:
- "data generated by XenCAT OD031956" or better "data generated by XenCAT resource funded by NIH OD031956"
- Petrova K, Tretiakov M, Kotov A, Monsoro-Burq AH, Peshkin L. A new atlas to study embryonic cell types in Xenopus. Dev Biol. 2024 Apr 11:S0012-1606(24)00098-8. doi: 10.1016/j.ydbio.2024.04.003. Epub ahead of print. PMID: 38614285.
Department of Systems Biology, Harvard Medical School, Boston, MA
02115, USA
*Correspondence to: pesha@hms.harvard.edu
*Gene names format: Xenbase gene ID (v10.0) | gene name (v10.0) | human ortholog gene name
*Gene names format: Xenbase gene ID (v10.7) | gene name (v10.7) | human ortholog gene name
Stage 8
Stage 10
Stage 11
Stage 12
Stage 13
Stage 14
Stage 16
Stage 18
Stage 20
Stage 22
AnnData file links:
Joint plots:
Stage 8-12
Stage 12-18
Stage 18-22
Germ line
Xenopus laevis, genome annotation v9.1
Data and processing made by Cell landscape of larval and adult Xenopus laevis at single-cell resolution, Yuan Liao et al.
*Gene names format: v9.1 gene name | human ortholog gene name | v9.1 gene id
Stage 48
Stage 54
Stage 59
Stage 66
